Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pbxip1Protein interacting with PRKCA 1. (754 aa)    
Predicted Functional Partners:
ELMSAN1
ELM2 and Myb/SANT domain containing 1.
      
 0.763
zmat2
Stimulator of chondrogenesis 1.
      
 0.619
pdlim4
Phosphoserine aminotransferase 1.
      
 0.574
rsph1
Uncharacterized protein.
      
 0.487
kansl1
Obg-like ATPase 1.
      
 0.459
gmcl1
Src homology 2 domain containing F.
    
   0.436
rps27l
40S ribosomal protein S27.
   
  
 0.422
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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