STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FNDC3AFibronectin type III domain containing 3A. (1231 aa)    
Predicted Functional Partners:
clptm1l
Cadherin related family member 1.
     
  0.900
rnf222
RING-type domain-containing protein.
     
  0.900
galnt2
Polypeptide N-acetylgalactosaminyltransferase.
   
 
  0.900
rap1b
Ras-related protein Rap-1b; Probable GTP-binding protein that possesses GTPase activity. May play a role in endothelial cell polarity and endothelial barrier function (By similarity); Belongs to the small GTPase superfamily. Ras family.
    
  0.810
cryba1.2
Uncharacterized protein; Belongs to the beta/gamma-crystallin family.
    
  0.810
rars1
Arginine--tRNA ligase, cytoplasmic; Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis.
     
  0.800
rhoa.2
Nuclear receptor binding SET domain protein 3.
    
  0.757
LOC100486174
Solute carrier family 13 member 4 like.
     
  0.750
csf1
Nucleophosmin/nucleoplasmin 3.
     
  0.750
nt5dc2
LOC100124988 protein.
     
  0.750
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.