STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arih2RBR-type E3 ubiquitin transferase. (493 aa)    
Predicted Functional Partners:
cul5
Fibroblast growth factor receptor like 1; Belongs to the cullin family.
    
 
 0.946
rnf7
RING-type domain-containing protein.
    
 
 0.869
ube2l3
Thymocyte selection associated; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.796
nedd8
Neural cell expressed, developmentally down-regulated 8.
   
 
 0.771
lrrcc1
UNC93-like protein MFSD11.
    
 
 0.660
asb7
L3MBTL1, histone methyl-lysine binding protein.
    
 
 0.581
klhl20
U6 snRNA biogenesis phosphodiesterase 1.
      
 0.579
elob
Protein FAM210A.
    
 
 0.571
btbd17
BTB/POZ domain-containing protein 17.
      
 0.541
wwp1
E3 ubiquitin-protein ligase.
   
 
 0.541
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.