Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LOC100490733 | UPF1 | ENSXETP00000019942 | ENSXETP00000026638 | Selenoprotein I. | UPF1 RNA helicase and ATPase. | 0.636 |
LOC100490733 | UPF3B | ENSXETP00000019942 | ENSXETP00000044483 | Selenoprotein I. | UPF3B regulator of nonsense mediated mRNA decay. | 0.940 |
LOC100490733 | alyref | ENSXETP00000019942 | ENSXETP00000001902 | Selenoprotein I. | THO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] | 0.989 |
LOC100490733 | atcay-3 | ENSXETP00000019942 | ENSXETP00000013990 | Selenoprotein I. | Smg4_UPF3 domain-containing protein. | 0.936 |
LOC100490733 | eif4a3.1 | ENSXETP00000019942 | ENSXETP00000031560 | Selenoprotein I. | Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] | 0.924 |
LOC100490733 | rnps1 | ENSXETP00000019942 | ENSXETP00000013469 | Selenoprotein I. | RNA-binding protein with serine-rich domain 1; Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Putative component of the spliceosome which enhances the formation of the ATP-dependent A complex of the spliceosome. May participate in mRNA 3'-end cleavage. Also mediates increase of mRNA a [...] | 0.656 |
UPF1 | LOC100490733 | ENSXETP00000026638 | ENSXETP00000019942 | UPF1 RNA helicase and ATPase. | Selenoprotein I. | 0.636 |
UPF1 | UPF3B | ENSXETP00000026638 | ENSXETP00000044483 | UPF1 RNA helicase and ATPase. | UPF3B regulator of nonsense mediated mRNA decay. | 0.960 |
UPF1 | alyref | ENSXETP00000026638 | ENSXETP00000001902 | UPF1 RNA helicase and ATPase. | THO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] | 0.966 |
UPF1 | atcay-3 | ENSXETP00000026638 | ENSXETP00000013990 | UPF1 RNA helicase and ATPase. | Smg4_UPF3 domain-containing protein. | 0.945 |
UPF1 | casc3 | ENSXETP00000026638 | ENSXETP00000004034 | UPF1 RNA helicase and ATPase. | Protein CASC3; Required for pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the core components remain bound to spliced mRNAs th [...] | 0.963 |
UPF1 | eif4a3.1 | ENSXETP00000026638 | ENSXETP00000031560 | UPF1 RNA helicase and ATPase. | Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Involved in pre-mRNA splicing as component of the spliceosome. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. The EJC is a dynamic structure consisting of core proteins and several peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. The EJC marks the position of the exon-exon junction in the mature mRNA for the gene expression machinery and the [...] | 0.853 |
UPF1 | magoh | ENSXETP00000026638 | ENSXETP00000039598 | UPF1 RNA helicase and ATPase. | Retinol binding protein 4, like. | 0.670 |
UPF1 | rnps1 | ENSXETP00000026638 | ENSXETP00000013469 | UPF1 RNA helicase and ATPase. | RNA-binding protein with serine-rich domain 1; Component of a splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junction on mRNAs. The EJC is a dynamic structure consisting of a few core proteins and several more peripheral nuclear and cytoplasmic associated factors that join the complex only transiently either during EJC assembly or during subsequent mRNA metabolism. Putative component of the spliceosome which enhances the formation of the ATP-dependent A complex of the spliceosome. May participate in mRNA 3'-end cleavage. Also mediates increase of mRNA a [...] | 0.978 |
UPF1 | smg5 | ENSXETP00000026638 | ENSXETP00000003965 | UPF1 RNA helicase and ATPase. | PINc domain-containing protein. | 0.863 |
UPF1 | upf2 | ENSXETP00000026638 | ENSXETP00000015788 | UPF1 RNA helicase and ATPase. | Outer dense fiber of sperm tails 2-like. | 0.999 |
UPF3B | LOC100490733 | ENSXETP00000044483 | ENSXETP00000019942 | UPF3B regulator of nonsense mediated mRNA decay. | Selenoprotein I. | 0.940 |
UPF3B | UPF1 | ENSXETP00000044483 | ENSXETP00000026638 | UPF3B regulator of nonsense mediated mRNA decay. | UPF1 RNA helicase and ATPase. | 0.960 |
UPF3B | alyref | ENSXETP00000044483 | ENSXETP00000001902 | UPF3B regulator of nonsense mediated mRNA decay. | THO complex subunit 4; Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap- dependent manner to a regio [...] | 0.778 |
UPF3B | atcay-3 | ENSXETP00000044483 | ENSXETP00000013990 | UPF3B regulator of nonsense mediated mRNA decay. | Smg4_UPF3 domain-containing protein. | 0.902 |
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