STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpm7Tsukushin. (1874 aa)    
Predicted Functional Partners:
trpv2
Carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.923
c8b-2
Complement component 8, beta polypeptide.
     
0.909
MLKL
Mixed lineage kinase domain like pseudokinase.
     
  0.900
slc20a1
Sodium-dependent phosphate transporter 1; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport; Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.590
myh8
Kinetochore protein Spc25; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
  0.546
tuba1cl.2
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
     
  0.540
nfya
Uncharacterized protein.
     
  0.540
sox13
Transcription factor Sox-13; Binds to the sequence 5'-AACAAT-3'.
     
  0.540
traf3-2
COP9 signalosome subunit 2.
    
  0.503
birc2-2
PX domain-containing protein.
     
  0.499
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.