STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plxna4Ribosomal RNA adenine dimethylase domain-containing 1. (1890 aa)    
Predicted Functional Partners:
rhoa.2
Nuclear receptor binding SET domain protein 3.
    
 0.588
ptprd
Semaphorin 6D.
   
 0.584
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 
 0.579
SEMA3E
Semaphorin 3E; Belongs to the semaphorin family.
    
 
 0.553
LOC100037901
Hemoglobin subunit beta-2; This is a larval (tadpole) beta-globin.
   
 
  0.545
plxnb3
Alpha-L-fucosidase 2.
    
0.545
adam33
Uncharacterized protein.
     
 0.544
hba-l2
GLOBIN domain-containing protein; Belongs to the globin family.
    
  0.542
hba1
Hemoglobin subunit alpha; Involved in oxygen transport from the lung to the various peripheral tissues.
    
  0.542
hbz
Spectrin repeat containing, nuclear envelope 2; Belongs to the globin family.
    
  0.542
Your Current Organism:
Xenopus tropicalis
NCBI taxonomy Id: 8364
Other names: Silurana tropicalis, X. tropicalis, Xenopus (Silurana) tropicalis, Xenopus laevis tropicalis, tropical clawed frog, western clawed frog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.