Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALZ96138.1IacB protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
ALZ96139.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
antA
Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
ALZ98648.1
Aromatic-ring-hydroxylating dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.936
hsaA
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
arcB
Aerobic respiration two-component sensor histidine kinase ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.883
fabG_7
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.877
ophA1
Vanillate O-demethylase oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.819
ALZ96135.1
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.795
rutF_2
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
ALZ96339.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.784
Your Current Organism:
Leclercia adecarboxylata
NCBI taxonomy Id: 83655
Other names: ATCC 23216, CIP 82.92, DSM 5077, Escherichia adecarboxylata, L. adecarboxylata, LMG 2803, LMG:2803, Leclercia sp. LK24, NBRC 102595, NCTC 13032
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