STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlAABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (587 aa)    
Predicted Functional Partners:
mdlB
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.981
ARD06229.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.900
glnQ
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.900
pepO
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.766
ARD07293.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
   
0.725
ARD07257.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.687
ARD06635.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
cfa
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.555
ARD07107.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.520
ARD06558.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.499
Your Current Organism:
Lactobacillus amylolyticus
NCBI taxonomy Id: 83683
Other names: CCUG 39901, DSM 11664, JCM 12529, L. amylolyticus, LMG 18796, LMG:18796, strain LA 5
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