STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B1745_03570Virulence protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
ARD07156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.693
ARD06305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.643
ARD06586.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
ARD06731.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.624
ARD06738.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
ARD07111.1
SEC10/PgrA surface exclusion domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.589
ARD06214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.569
ARD06318.1
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.498
ARD07159.1
Serine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.492
ARD06911.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
Your Current Organism:
Lactobacillus amylolyticus
NCBI taxonomy Id: 83683
Other names: CCUG 39901, DSM 11664, JCM 12529, L. amylolyticus, LMG 18796, LMG:18796, strain LA 5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.