STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pacLHaloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (919 aa)    
Predicted Functional Partners:
ARD06307.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.899
ARD07000.1
AI-2E family transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.599
ARD07001.1
PTS sorbitol transporter subunit IIA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
napA2
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
 
 0.565
fabG
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.535
ARD07003.1
3-carboxymuconate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
ARD06161.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.520
ARD06995.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
ARD06996.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
cspR
tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.478
Your Current Organism:
Lactobacillus amylolyticus
NCBI taxonomy Id: 83683
Other names: CCUG 39901, DSM 11664, JCM 12529, L. amylolyticus, LMG 18796, LMG:18796, strain LA 5
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