STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM94861.1FecR family protein. (147 aa)    
Predicted Functional Partners:
SFM94891.1
Outer membrane protein OmpA.
 
     0.903
SFM94915.1
Adenylate cyclase.
 
     0.903
SFN29124.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
 
     0.745
SFN28804.1
HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant).
 
     0.672
SFM94937.1
Hypothetical protein.
       0.662
SFN84815.1
Adenylate cyclase.
 
     0.517
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.509
SFN61960.1
Tetratricopeptide repeat-containing protein.
  
 
  0.494
SFN70521.1
Hypothetical protein.
 
  
  0.494
SFN92387.1
Hypothetical protein.
 
  
  0.481
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.