STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM97596.1Pilus assembly protein FimV. (992 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.903
SFN27682.1
Type IV pilus assembly protein PilN.
  
  
 0.848
SFN19239.1
Twitching motility protein PilI.
  
  
  0.846
SFN19280.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
  
 0.846
SFN27712.1
Type IV pilus assembly protein PilO.
  
  
 0.839
SFN16419.1
Protein of unknown function.
  
 
 
 0.837
SFN27648.1
Type IV pilus assembly protein PilM.
  
  
 0.806
SFM97622.1
Cobalt transport protein.
       0.795
SFN27770.1
Type IV pilus assembly protein PilQ.
  
  
 0.781
SFN27740.1
Type IV pilus assembly protein PilP.
  
  
 0.779
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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