STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM98371.1UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase. (338 aa)    
Predicted Functional Partners:
SFM98416.1
N-acetylneuraminate synthase.
 
 
 0.995
SFM98391.1
methionyl-tRNA formyltransferase.
     0.982
SFM98337.1
N-acylneuraminate cytidylyltransferase.
   
 0.972
SFM98315.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.958
SFM98493.1
Protein N-acetyltransferase, RimJ/RimL family.
  
 
 0.907
SFN29713.1
N-acetylneuraminate synthase.
 
 
 0.875
SFM98474.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.843
SFM98531.1
Glycosyltransferase, GT2 family.
 
    0.841
SFM98511.1
Methyltransferase domain-containing protein.
 
     0.814
SFN29838.1
UDP-N-acetylglucosamine 4,6-dehydratase (inverting).
 
   
 0.810
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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