STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN12427.1Sigma E regulatory protein, MucB/RseB. (316 aa)    
Predicted Functional Partners:
SFN12461.1
sigma-E factor negative regulatory protein RseA.
 
 
 0.998
SFN12403.1
Positive regulator of sigma(E), RseC/MucC.
  
  
 0.986
SFN12485.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.956
SFN43545.1
Positive regulator of sigma(E), RseC/MucC.
  
  
 0.846
SFN12383.1
Serine protease Do; Belongs to the peptidase S1C family.
  
  
 0.787
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.657
SFN92831.1
YggT family protein.
  
     0.628
SFN04504.1
Hypothetical protein.
  
     0.619
SFN38437.1
Methyltransferase domain-containing protein.
  
     0.614
SFN62622.1
Protein of unknown function.
  
     0.595
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.