STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN16815.1Type VI secretion system protein VasD. (176 aa)    
Predicted Functional Partners:
SFN16863.1
Type VI secretion system protein ImpK.
 
  
 0.967
SFN16841.1
Type VI secretion system protein ImpJ.
 
  
 0.958
SFN16885.1
Type VI secretion system protein ImpF.
 
  
 0.948
SFN16718.1
Type VI secretion system protein ImpB.
 
  
 0.929
SFN16021.1
Type VI secretion system protein ImpG.
 
  
 0.910
SFN16684.1
Type VI secretion system protein ImpC.
 
  
 0.906
SFN16046.1
Type VI secretion system protein ImpH.
 
  
 0.900
SFN93754.1
Rhs element Vgr protein.
 
  
 0.894
SFN94396.1
Hypothetical protein.
 
  
 0.894
SFN16663.1
Type VI secretion system secreted protein Hcp.
 
  
 0.886
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.