STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN95564.1Polyhydroxyalkanoate synthesis repressor PhaR. (223 aa)    
Predicted Functional Partners:
SFN95603.1
Phasin family protein.
 
   
 0.823
SFN78762.1
Polyhydroxyalkanoate synthase.
 
   
 0.810
SFN60324.1
Polyhydroxyalkanoate synthase.
 
   
 0.806
SFN73506.1
Phasin family protein.
 
   
 0.661
SFM93104.1
3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.636
SFN35118.1
3-oxoacyl-[acyl-carrier-protein] reductase.
 
   
 0.636
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.565
SFN95483.1
tRNA A37 threonylcarbamoyladenosine dehydratase.
       0.519
SFN95442.1
4-amino-4-deoxy-L-arabinose transferase.
       0.508
SFN73765.1
NTE family protein.
 
   
 0.492
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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