STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN97359.123S rRNA pseudouridine2604 synthase; Belongs to the pseudouridine synthase RsuA family. (243 aa)    
Predicted Functional Partners:
SFN97394.1
23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase.
  
    0.775
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.679
SFN97319.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.574
SFN97111.1
Type IV pilus assembly protein PilB.
       0.570
SFN97145.1
Type IV pilus assembly protein PilC.
       0.570
SFN97190.1
Hypothetical protein.
       0.570
SFN97220.1
Hypothetical protein.
       0.570
SFN97253.1
Hypothetical protein.
       0.570
SFN97283.1
Hypothetical protein.
       0.570
cmk
Cytidylate kinase.
  
  
 0.560
Your Current Organism:
Formivibrio citricus
NCBI taxonomy Id: 83765
Other names: ATCC 49791, DSM 6150, F. citricus, strain CreCit1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.