STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG58968.1Caspase domain-containing protein. (615 aa)    
Predicted Functional Partners:
SDH83565.1
Adenylate cyclase.
 
  
  0.675
SDG75371.1
WD40 repeat.
 
     0.569
SDG66390.1
Curli biogenesis system outer membrane secretion channel CsgG.
  
   
 0.488
SDI76007.1
CHAT domain-containing protein.
 
     0.463
SDG74575.1
CHAT domain-containing protein.
 
     0.449
SDI24795.1
Tetratricopeptide repeat-containing protein.
 
     0.449
SDH02189.1
CHAT domain-containing protein.
 
     0.417
Your Current Organism:
Propionivibrio dicarboxylicus
NCBI taxonomy Id: 83767
Other names: DSM 5885, JCM 12339, JCM 7784, P. dicarboxylicus, strain CreMal1
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.