Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG52930.1 | SDG77877.1 | SAMN05660652_00045 | SAMN05660652_00701 | Sporulation related domain-containing protein. | Exoribonuclease-2. | 0.495 |
SDG52930.1 | SDI72832.1 | SAMN05660652_00045 | SAMN05660652_03943 | Sporulation related domain-containing protein. | DedD protein. | 0.613 |
SDG52930.1 | ftsI | SAMN05660652_00045 | SAMN05660652_02305 | Sporulation related domain-containing protein. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.650 |
SDG52930.1 | mrdA | SAMN05660652_00045 | SAMN05660652_00351 | Sporulation related domain-containing protein. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.650 |
SDG52930.1 | mtgA | SAMN05660652_00045 | SAMN05660652_00698 | Sporulation related domain-containing protein. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.836 |
SDG66142.1 | mtgA | SAMN05660652_00388 | SAMN05660652_00698 | Hypothetical protein. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.852 |
SDG69427.1 | ftsI | SAMN05660652_00468 | SAMN05660652_02305 | Sporulation related domain-containing protein. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.896 |
SDG69427.1 | mrdA | SAMN05660652_00468 | SAMN05660652_00351 | Sporulation related domain-containing protein. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.671 |
SDG69427.1 | mtgA | SAMN05660652_00468 | SAMN05660652_00698 | Sporulation related domain-containing protein. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.843 |
SDG77877.1 | SDG52930.1 | SAMN05660652_00701 | SAMN05660652_00045 | Exoribonuclease-2. | Sporulation related domain-containing protein. | 0.495 |
SDG77877.1 | aroE | SAMN05660652_00701 | SAMN05660652_00699 | Exoribonuclease-2. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.773 |
SDG77877.1 | mtgA | SAMN05660652_00701 | SAMN05660652_00698 | Exoribonuclease-2. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.824 |
SDG77877.1 | uppP | SAMN05660652_00701 | SAMN05660652_00703 | Exoribonuclease-2. | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.809 |
SDI72832.1 | SDG52930.1 | SAMN05660652_03943 | SAMN05660652_00045 | DedD protein. | Sporulation related domain-containing protein. | 0.613 |
SDI72832.1 | ftsI | SAMN05660652_03943 | SAMN05660652_02305 | DedD protein. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily. | 0.650 |
SDI72832.1 | mrdA | SAMN05660652_03943 | SAMN05660652_00351 | DedD protein. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.650 |
SDI72832.1 | mtgA | SAMN05660652_03943 | SAMN05660652_00698 | DedD protein. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.836 |
aroE | SDG77877.1 | SAMN05660652_00699 | SAMN05660652_00701 | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Exoribonuclease-2. | 0.773 |
aroE | mtgA | SAMN05660652_00699 | SAMN05660652_00698 | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.837 |
aroE | uppP | SAMN05660652_00699 | SAMN05660652_00703 | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. | 0.799 |
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