STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMRab proteins geranylgeranyltransferase component A. (639 aa)    
Predicted Functional Partners:
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
   
 0.973
RABGGTB
Geranylgeranyl transferase type-2 subunit beta.
    
 0.964
RAB7A
RAB7A, member RAS oncogene family.
    
 0.814
PTAR1
Protein prenyltransferase alpha subunit repeat containing protein 1.
   
 0.787
RABGEF1
RAB guanine nucleotide exchange factor 1.
     
 0.667
RAB5B
RAB5B, member RAS oncogene family.
    
 0.647
RAB29
RAB29, member RAS oncogene family.
    
 0.647
RAB1B
RAB1B, member RAS oncogene family.
    
 0.646
RAB1A
RAB1A, member RAS oncogene family.
    
 0.646
RAB39A
RAB39A, member RAS oncogene family.
    
 0.633
Your Current Organism:
Equus asinus
NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.