STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP3Ubiquitin carboxyl-terminal hydrolase 3. (518 aa)    
Predicted Functional Partners:
ZCCHC3
Zinc finger CCHC-type containing 3.
    
 
 0.786
VCPIP1
Valosin containing protein interacting protein 1.
   
  
 0.773
USP40
Ubiquitin carboxyl-terminal hydrolase 40.
    
 
0.768
SPRTN
SprT-like domain-contaning protein Spartan.
      
 0.753
TAF10
TATA-box binding protein associated factor 10.
    
 0.747
TAF9B
Transcription initiation factor TFIID subunit 9B.
    
 0.744
TRIM38
Tripartite motif-containing protein 38.
    
 
 0.716
OTUB1
OTU deubiquitinase, ubiquitin aldehyde binding 1.
      
 0.714
ENY2
ENY2, transcription and export complex 2 subunit.
    
 0.711
TAF5L
TATA-box binding protein associated factor 5 like.
   
 0.702
Your Current Organism:
Equus asinus
NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.