STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PATL1PAT1 homolog 1, processing body mRNA decay factor. (793 aa)    
Predicted Functional Partners:
DDX6
ATP-dependent RNA helicase DDX6/DHH1.
   
 0.991
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.973
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.969
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.968
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.959
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.957
LSM4
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.955
LSM1
LSM1 homolog, mRNA degradation associated.
    
 0.955
CNOT3
CCR4-NOT transcription complex subunit 3.
   
 0.948
DCP2
MRNA-decapping enzyme subunit 2.
    
 0.945
Your Current Organism:
Equus asinus
NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.