SDC1 protein (Equus asinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDC1

Syndecan 1. (311 aa)

Predicted Functional Partners:

SDC4

0.984

GPC1

0.983

HPSE

0.973

HPSE2

0.972

SDC2

0.970

SDC3

0.967

THBS1

0.967

MMP9

0.965

ITGB3

0.953

ITGAV

0.947

Your Current Organism:

Equus asinus

NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GPC1	HPSE	ENSEASP00005010527	ENSEASP00005019393	Glypican 1.	Heparanase.	0.460
GPC1	HPSE2	ENSEASP00005010527	ENSEASP00005011914	Glypican 1.	Inactive heparanase-2.	0.492
GPC1	SDC1	ENSEASP00005010527	ENSEASP00005013481	Glypican 1.	Syndecan 1.	0.983
GPC1	SDC2	ENSEASP00005010527	ENSEASP00005004353	Glypican 1.	Syndecan 2.	0.933
GPC1	SDC3	ENSEASP00005010527	ENSEASP00005015501	Glypican 1.	Syndecan 3.	0.693
GPC1	SDC4	ENSEASP00005010527	ENSEASP00005034262	Glypican 1.	Syndecan 4.	0.952
HPSE	GPC1	ENSEASP00005019393	ENSEASP00005010527	Heparanase.	Glypican 1.	0.460
HPSE	HPSE2	ENSEASP00005019393	ENSEASP00005011914	Heparanase.	Inactive heparanase-2.	0.903
HPSE	SDC1	ENSEASP00005019393	ENSEASP00005013481	Heparanase.	Syndecan 1.	0.973
HPSE	SDC3	ENSEASP00005019393	ENSEASP00005015501	Heparanase.	Syndecan 3.	0.443
HPSE2	GPC1	ENSEASP00005011914	ENSEASP00005010527	Inactive heparanase-2.	Glypican 1.	0.492
HPSE2	HPSE	ENSEASP00005011914	ENSEASP00005019393	Inactive heparanase-2.	Heparanase.	0.903
HPSE2	SDC1	ENSEASP00005011914	ENSEASP00005013481	Inactive heparanase-2.	Syndecan 1.	0.972
HPSE2	SDC3	ENSEASP00005011914	ENSEASP00005015501	Inactive heparanase-2.	Syndecan 3.	0.496
ITGAV	ITGB3	ENSEASP00005032280	ENSEASP00005015155	Integrin subunit alpha V.	Integrin subunit beta 3.	0.999
ITGAV	MMP9	ENSEASP00005032280	ENSEASP00005034218	Integrin subunit alpha V.	Matrix metalloproteinase-9 (gelatinase B).	0.474
ITGAV	SDC1	ENSEASP00005032280	ENSEASP00005013481	Integrin subunit alpha V.	Syndecan 1.	0.947
ITGAV	THBS1	ENSEASP00005032280	ENSEASP00005024578	Integrin subunit alpha V.	Thrombospondin 1.	0.974
ITGB3	ITGAV	ENSEASP00005015155	ENSEASP00005032280	Integrin subunit beta 3.	Integrin subunit alpha V.	0.999
ITGB3	MMP9	ENSEASP00005015155	ENSEASP00005034218	Integrin subunit beta 3.	Matrix metalloproteinase-9 (gelatinase B).	0.616