STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C. (935 aa)    
Predicted Functional Partners:
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
    
 0.976
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
    
 0.975
TBP
Transcription initiation factor TFIID TATA-box-binding protein.
    
 0.925
ENSEASP00005005754
Transcription initiation factor TFIID TATA-box-binding protein.
    
 0.762
TWISTNB
DNA-directed RNA polymerase I subunit RPA43.
     
 0.725
POLR1A
DNA-directed RNA polymerase I subunit RPA1.
   
 0.719
POLR1B
DNA-directed RNA polymerase I subunit RPA2.
    
 0.715
UBTF
Upstream binding transcription factor.
    
 0.703
AHCTF1
AT-hook containing transcription factor 1.
      
 0.691
SPC24
SPC24, NDC80 kinetochore complex component.
      
 0.682
Your Current Organism:
Equus asinus
NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus
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