STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF8SR-related CTD associated factor 8. (1289 aa)    
Predicted Functional Partners:
TMEM242
Transmembrane protein 242.
      
 0.956
SERAC1
Serine active site containing 1.
      
 0.931
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.912
SETX
Senataxin.
   
 0.911
TULP4
TUB like protein 4.
      
 0.897
GTF2H5
TFIIH basal transcription factor complex TTD-A subunit.
    
 
 0.887
TFB1M
Dimethyladenosine transferase 1, mitochondrial.
   
  
 0.861
TMEM196
Transmembrane protein 196.
      
 0.770
RPS6KA2
Ribosomal protein S6 kinase alpha-1/2/3/6.
      
 0.766
ARID1B
AT-rich interactive domain-containing protein 1.
   
  
 0.764
Your Current Organism:
Equus asinus
NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.