ABCB5 protein (Equus asinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABCB5

ATP-binding cassette, subfamily B (MDR/TAP), member 5. (1228 aa)

Predicted Functional Partners:

MAIP1

0.683

ARHGAP42

0.663

ENSEASP00005026343

0.652

ENSEASP00005026344

0.652

NEPRO

0.639

STOX2

0.633

PRSS56

0.610

ATP6V1E2

0.599

ASCL4

0.597

ABCC11

0.528

Your Current Organism:

Equus asinus

NCBI taxonomy Id: 83772
Other names: E. asinus asinus, Equus asinus asinus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCB5	ABCC11	ENSEASP00005031836	ENSEASP00005021203	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	ATP-binding cassette, subfamily C (CFTR/MRP), member 11.	0.528
ABCB5	ARHGAP42	ENSEASP00005031836	ENSEASP00005016124	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Rho GTPase activating protein 42.	0.663
ABCB5	ASCL4	ENSEASP00005031836	ENSEASP00005028050	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Achaete-scute family bHLH transcription factor 4.	0.597
ABCB5	ATP6V1E2	ENSEASP00005031836	ENSEASP00005004010	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	V-type H+-transporting ATPase subunit E.	0.599
ABCB5	ENSEASP00005026343	ENSEASP00005031836	ENSEASP00005026343	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Olfactory receptor 2G2-like.	0.652
ABCB5	ENSEASP00005026344	ENSEASP00005031836	ENSEASP00005026344	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Olfactory receptor 2G2-like.	0.652
ABCB5	MAIP1	ENSEASP00005031836	ENSEASP00005029532	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Matrix AAA peptidase interacting protein 1.	0.683
ABCB5	NEPRO	ENSEASP00005031836	ENSEASP00005016507	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Nucleolus and neural progenitor protein.	0.639
ABCB5	PRSS56	ENSEASP00005031836	ENSEASP00005028822	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Serine protease 56.	0.610
ABCB5	STOX2	ENSEASP00005031836	ENSEASP00005027055	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	Storkhead box 2.	0.633
ABCC11	ABCB5	ENSEASP00005021203	ENSEASP00005031836	ATP-binding cassette, subfamily C (CFTR/MRP), member 11.	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	0.528
ARHGAP42	ABCB5	ENSEASP00005016124	ENSEASP00005031836	Rho GTPase activating protein 42.	ATP-binding cassette, subfamily B (MDR/TAP), member 5.	0.663
ARHGAP42	ASCL4	ENSEASP00005016124	ENSEASP00005028050	Rho GTPase activating protein 42.	Achaete-scute family bHLH transcription factor 4.	0.806
ARHGAP42	ATP6V1E2	ENSEASP00005016124	ENSEASP00005004010	Rho GTPase activating protein 42.	V-type H+-transporting ATPase subunit E.	0.791
ARHGAP42	ENSEASP00005026343	ENSEASP00005016124	ENSEASP00005026343	Rho GTPase activating protein 42.	Olfactory receptor 2G2-like.	0.850
ARHGAP42	ENSEASP00005026344	ENSEASP00005016124	ENSEASP00005026344	Rho GTPase activating protein 42.	Olfactory receptor 2G2-like.	0.850
ARHGAP42	MAIP1	ENSEASP00005016124	ENSEASP00005029532	Rho GTPase activating protein 42.	Matrix AAA peptidase interacting protein 1.	0.836
ARHGAP42	NEPRO	ENSEASP00005016124	ENSEASP00005016507	Rho GTPase activating protein 42.	Nucleolus and neural progenitor protein.	0.833
ARHGAP42	PRSS56	ENSEASP00005016124	ENSEASP00005028822	Rho GTPase activating protein 42.	Serine protease 56.	0.795
ARHGAP42	STOX2	ENSEASP00005016124	ENSEASP00005027055	Rho GTPase activating protein 42.	Storkhead box 2.	0.841