STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA02541.1Helix-turn-helix domain-containing protein. (76 aa)    
Predicted Functional Partners:
SEA99621.1
Hypothetical protein.
  
     0.682
SEA12584.1
SnoaL-like domain-containing protein.
  
     0.644
SEB05997.1
Protein of unknown function.
  
     0.618
SEB01392.1
General secretion pathway protein J.
  
     0.615
SEB15680.1
Outer membrane protein (porin).
  
     0.609
SEA59056.1
Glycosyltransferase involved in cell wall bisynthesis.
 
      0.585
SEA84569.1
Outer membrane protein (porin).
  
     0.572
SEB16438.1
Outer membrane protein (porin).
  
     0.569
SEB01319.1
Type II secretion system protein N (GspN).
  
     0.562
SEA85906.1
Hypothetical protein.
  
    0.542
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.