Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEA62017.1Type VI secretion system protein ImpB. (183 aa)    
Predicted Functional Partners:
SEA61994.1
Type VI secretion system protein ImpC.
 0.999
SEB21124.1
Type VI secretion system protein ImpC.
 0.997
SEA61973.1
Type VI secretion system secreted protein Hcp.
 
 0.980
SEA61649.1
Type VI secretion system protein ImpJ.
 
 
 0.966
SEB21140.1
Type VI secretion system protein ImpJ.
 
 
 0.959
SEA61948.1
Type VI secretion system protein ImpF.
 
  
 0.937
SEA61926.1
Type VI secretion system protein ImpG.
 
  
 0.932
SEA61899.1
Type VI secretion system protein ImpH.
 
 
 0.919
SEA61631.1
Type VI secretion system protein ImpK.
 
  
 0.914
SEA61608.1
Type VI secretion system protein ImpL.
 
 
 0.907
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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