Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEA37031.1 | SEA62868.1 | SAMN05192564_1011241 | SAMN05192564_102438 | Exonuclease RecJ. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.506 |
SEA37031.1 | ruvA | SAMN05192564_1011241 | SAMN05192564_102781 | Exonuclease RecJ. | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.579 |
SEA62785.1 | SEA62804.1 | SAMN05192564_102434 | SAMN05192564_102435 | Lyso-ornithine lipid acyltransferase. | Dihydroorotase. | 0.686 |
SEA62785.1 | SEA62849.1 | SAMN05192564_102434 | SAMN05192564_102437 | Lyso-ornithine lipid acyltransferase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.409 |
SEA62785.1 | SEA62868.1 | SAMN05192564_102434 | SAMN05192564_102438 | Lyso-ornithine lipid acyltransferase. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.423 |
SEA62785.1 | SEA62894.1 | SAMN05192564_102434 | SAMN05192564_102439 | Lyso-ornithine lipid acyltransferase. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.409 |
SEA62785.1 | pyrB | SAMN05192564_102434 | SAMN05192564_102436 | Lyso-ornithine lipid acyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.530 |
SEA62804.1 | SEA62785.1 | SAMN05192564_102435 | SAMN05192564_102434 | Dihydroorotase. | Lyso-ornithine lipid acyltransferase. | 0.686 |
SEA62804.1 | SEA62849.1 | SAMN05192564_102435 | SAMN05192564_102437 | Dihydroorotase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.990 |
SEA62804.1 | SEA62868.1 | SAMN05192564_102435 | SAMN05192564_102438 | Dihydroorotase. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.517 |
SEA62804.1 | SEA62894.1 | SAMN05192564_102435 | SAMN05192564_102439 | Dihydroorotase. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.465 |
SEA62804.1 | pyrB | SAMN05192564_102435 | SAMN05192564_102436 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SEA62849.1 | SEA62785.1 | SAMN05192564_102437 | SAMN05192564_102434 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Lyso-ornithine lipid acyltransferase. | 0.409 |
SEA62849.1 | SEA62804.1 | SAMN05192564_102437 | SAMN05192564_102435 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Dihydroorotase. | 0.990 |
SEA62849.1 | SEA62868.1 | SAMN05192564_102437 | SAMN05192564_102438 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.802 |
SEA62849.1 | SEA62894.1 | SAMN05192564_102437 | SAMN05192564_102439 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family. | 0.800 |
SEA62849.1 | pyrB | SAMN05192564_102437 | SAMN05192564_102436 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.996 |
SEA62868.1 | SEA37031.1 | SAMN05192564_102438 | SAMN05192564_1011241 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Exonuclease RecJ. | 0.506 |
SEA62868.1 | SEA62785.1 | SAMN05192564_102438 | SAMN05192564_102434 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Lyso-ornithine lipid acyltransferase. | 0.423 |
SEA62868.1 | SEA62804.1 | SAMN05192564_102438 | SAMN05192564_102435 | Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Dihydroorotase. | 0.517 |
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