STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA63166.1Citrate/tricarballylate utilization protein. (391 aa)    
Predicted Functional Partners:
SEA63189.1
Tricarballylate dehydrogenase.
 
 
 0.964
SEA63209.1
LysR family transcriptional regulator, regulatory protein for tcuABC.
 
     0.920
SEB19421.1
Isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
  
 
 0.884
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 
 0.874
gltB
Glutamate synthase (NADH) large subunit.
    
  0.829
SEA04329.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.765
SEB05912.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.765
SEA71699.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.758
SEB05900.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+); Belongs to the malic enzymes family.
    
 0.758
SEB10400.1
benzoyl-CoA oxygenase, component A.
 
  
  0.743
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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