STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA96182.1Lipoprotein NlpD. (244 aa)    
Predicted Functional Partners:
SEB19343.1
Thiamine-phosphate pyrophosphorylase/8-oxo-dGTP diphosphatase.
   
   0.920
SEA30565.1
Tetratricopeptide repeat-containing protein.
  
 0.836
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
    
 0.812
purA-2
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
  0.788
SEA14201.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.764
SEB24896.1
Lipoprotein NlpD.
 
 
0.705
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.701
SEA96199.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.701
SEA80231.1
Lipoprotein NlpD.
 
 
0.695
SEA59930.1
Type IV secretion system protein VirB10.
    
 
 0.694
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.