STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB10400.1benzoyl-CoA oxygenase, component A. (415 aa)    
Predicted Functional Partners:
SEB10408.1
benzoyl-CoA oxygenase, component B.
 
  
 0.994
SEB10416.1
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme.
 
  
 0.994
SEA20769.1
Formate dehydrogenase alpha subunit.
  
 0.967
SEA68225.1
Hypothetical protein.
   
 0.967
SEA93479.1
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.962
SEA20851.1
Formate dehydrogenase gamma subunit.
  
 0.956
SEA53320.1
NADH dehydrogenase subunit E.
  
 0.956
SEA34215.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
0.954
SEA16236.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 0.954
gltB
Glutamate synthase (NADH) large subunit.
  
 
 0.948
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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