STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB15366.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SEB15360.1
Nicotinamidase-related amidase.
 
     0.872
SEB15354.1
DNA-binding transcriptional regulator, MarR family.
 
     0.869
SEB15376.1
Predicted arabinose efflux permease, MFS family.
 
     0.835
SEA84211.1
Hypothetical protein.
  
     0.627
SEB23806.1
Hypothetical protein.
  
     0.570
SEA62059.1
HD domain-containing protein.
  
     0.548
SEB22492.1
Protein of unknown function.
  
     0.534
SEA99637.1
Transglutaminase-like superfamily protein.
  
     0.503
SEB12859.1
AraC-type DNA-binding protein.
  
     0.484
SEA85596.1
Transglutaminase-like superfamily protein.
  
     0.477
Your Current Organism:
Paraburkholderia sartisoli
NCBI taxonomy Id: 83784
Other names: Burkholderia sartisoli, Burkholderia sartisoli Vanlaere et al. 2008, Burkholderia sp. LMG 22948, Burkholderia sp. R-701, Burkholderia sp. RG6-9, Burkholderia sp. RP007, CCUG 53604, ICMP 13529, LMG 24000, LMG:24000, P. sartisoli, Paraburkholderia sartisoli (Vanlaere et al. 2008) Sawana et al. 2015, strain RP 007, strain RP007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.