STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOP58420.1Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (75 aa)    
Predicted Functional Partners:
KOP58421.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.954
vapC
Plasmid stability protein StbB; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
 
 
 0.874
KOP52917.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.865
KOP54073.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.833
KOP50923.1
Plasmid stability protein stbC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.514
KOP58422.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
KOP51147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.402
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.