STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOP56938.1Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)    
Predicted Functional Partners:
KOP56936.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
KOP56939.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.808
KOP56937.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
fliI
ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
KOP56935.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.788
KOP56934.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.728
KOP56942.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.595
KOP56944.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.572
KOP56941.1
Myosin heavy chain B (MHC B); Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
ssaR
Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.559
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.