Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KOP56858.1General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)    
Predicted Functional Partners:
KOP56854.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.996
KOP56855.1
Pilus assembly protein PilX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
KOP56856.1
Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.992
KOP56857.1
Pilus assembly protein PilV; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
KOP56853.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.983
KOP56859.1
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.805
KOP56852.1
D-amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
KOP57408.1
Pilus assembly protein PilN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.725
KOP57409.1
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.720
KOP52725.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.701
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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