STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOP55514.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (262 aa)    
Predicted Functional Partners:
KOP52765.1
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.904
KOP55853.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.898
KOP56747.1
Coronamic acid synthetase CmaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.897
KOP57936.1
Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.862
KOP50999.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.804
gltB
Catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.767
KOP57549.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.764
KOP54192.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.753
KOP55435.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.723
KOP57922.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.713
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.