Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOP54711.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)    
Predicted Functional Partners:
KOP54713.1
Thiol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.972
KOP54714.1
Imelysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.943
KOP53528.1
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.879
KOP54737.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.873
KOP59019.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.809
KOP54498.1
Nickel ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.779
KOP54710.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.690
KOP55312.1
Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.482
KOP55564.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
KOP57998.1
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.446
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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