STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOP54564.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)    
Predicted Functional Partners:
KOP57506.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.947
KOP56459.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.925
KOP56333.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.921
KOP58146.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.906
KOP54853.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.902
KOP57000.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.900
KOP52004.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.891
KOP56162.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.887
KOP55248.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.886
KOP55585.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.885
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.