STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOP52605.1Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)    
Predicted Functional Partners:
KOP52606.1
Repressor protein c2; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.564
KOP52603.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.488
KOP52607.1
Prophage PssSM-02; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.454
KOP52602.1
Replication protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
KOP52600.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KOP52601.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KOP52604.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KOP52594.1
Antitermination protein Q; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
KOP52595.1
Prophage PssSM-03; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
KOP52596.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.401
Your Current Organism:
Pseudomonas coronafaciens
NCBI taxonomy Id: 83964
Other names: P. coronafaciens pv. porri, Pseudomonas coronafaciens pv. porri, Pseudomonas syringae pv. porri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.