STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepA1Multidrug export protein MepA. (480 aa)    
Predicted Functional Partners:
AKL95348.1
Sigma54 specific transcriptional regulator Fis family.
       0.664
AKL96308.1
Putative efflux protein, MATE family.
 
     0.612
gyrA2
DNA gyrase subunit A.
     
 0.559
gyrB2
DNA gyrase subunit B.
  
  
 0.505
matE8
Na+ driven multidrug efflux pump.
  
     0.500
gap
Glyceraldehyde-3-phosphate dehydrogenase Gap; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.467
rpsA
30S ribosomal protein S1.
   
    0.453
AKL95347.1
Hypothetical protein; Belongs to the UPF0597 family.
       0.417
Your Current Organism:
Clostridium aceticum
NCBI taxonomy Id: 84022
Other names: ATCC 35044, C. aceticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.