STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerKB3Spore germination protein KB. (361 aa)    
Predicted Functional Partners:
gerKC3
Spore germination protein KC.
 
  
 0.907
gerKA3
Spore germination protein KA.
 
  
 0.842
gerKC5
Spore germination protein KC.
 
  
 0.789
yndF
Spore germination protein YndF.
 
  
 0.788
gerKC4
Spore germination protein KC.
 
  
 0.777
gerKC1
Spore germination protein KC.
 
  
 0.770
gerKC2
Spore germination protein KC.
 
  
 0.762
gerAC
Spore germination protein.
 
  
 0.734
AKL96373.1
Spore germination B3 GerAC family protein.
 
  
 0.730
AKL96477.1
Spore germination protein.
  
     0.721
Your Current Organism:
Clostridium aceticum
NCBI taxonomy Id: 84022
Other names: ATCC 35044, C. aceticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.