Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKL95407.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
ytqB
rRNA methylase YtqB.
       0.742
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)]; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
   0.616
rluB
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.481
pyk
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
  
 
 0.456
pycB
Pyruvate carboxylase subunit B.
       0.417
Your Current Organism:
Clostridium aceticum
NCBI taxonomy Id: 84022
Other names: ATCC 35044, C. aceticum
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