STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxdL_1ABC transporter ATP-binding protein YxdL. (256 aa)    
Predicted Functional Partners:
bceB_1
Bacitracin export permease protein BceB.
 
 0.984
yxdM_4
ABC transporter permease protein YxdM.
 
 0.933
yxdM_1
ABC transporter permease protein YxdM.
 
 0.929
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
  0.915
yxdM_3
ABC transporter permease protein YxdM.
 
 0.850
graS_1
Sensor histidine kinase GraS.
 
 
 0.828
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.811
yxdM_2
ABC transporter permease protein YxdM.
 
 0.807
macB_5
Macrolide export ATP-binding/permease protein MacB.
  
0.793
ytrF_3
ABC transporter permease YtrF precursor.
 
  0.765
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.