STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhgT_1Rhamnogalacturonan acetylesterase RhgT. (231 aa)    
Predicted Functional Partners:
pgl_1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  0.980
pehX_4
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
 0.943
pehX_3
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
 0.934
pemA_1
Pectinesterase A precursor.
  
 0.924
pehX_1
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
 0.894
pehX_2
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  0.884
pelL_3
Pectate lyase L precursor.
  
  0.843
pelL_2
Pectate lyase L precursor.
  
  0.841
pelL_4
Pectate lyase L precursor.
  
  0.839
yteR
Unsaturated rhamnogalacturonyl hydrolase YteR.
 
  0.838
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.