STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vanWVancomycin B-type resistance protein VanW. (409 aa)    
Predicted Functional Partners:
pepA_1
Glutamyl aminopeptidase.
       0.606
yocH_4
Cell wall-binding protein YocH precursor.
 
     0.477
cinA
Putative competence-damage inducible protein; Belongs to the CinA family.
       0.450
OOL85330.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.