STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrdBRod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (373 aa)    
Predicted Functional Partners:
spoVD_3
Stage V sporulation protein D.
 0.980
spoVD_1
Stage V sporulation protein D.
 0.978
spoVD_2
Stage V sporulation protein D.
 0.977
ftsI_1
Peptidoglycan synthase FtsI precursor.
 
 0.976
ftsI_3
Peptidoglycan synthase FtsI precursor.
 
 0.975
ftsI_2
Peptidoglycan synthase FtsI precursor.
 
 0.974
pbpH
Penicillin-binding protein H.
 
 0.972
pbpA
Penicillin-binding protein A.
 0.964
pbpB
Penicillin-binding protein PbpB.
 
 0.936
mreB_1
Rod shape-determining protein MreB.
 
 
 0.935
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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