Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOL85894.1Hypothetical protein. (1389 aa)    
Predicted Functional Partners:
OOL85895.1
Hypothetical protein.
       0.746
OOL85893.1
Hypothetical protein.
      
0.686
OOL85892.1
Hypothetical protein.
       0.638
OOL85891.1
Hypothetical protein.
       0.629
OOL85896.1
Hypothetical protein.
       0.624
OOL85888.1
Hypothetical protein.
       0.608
OOL85889.1
Hypothetical protein.
       0.608
OOL85890.1
Hypothetical protein.
       0.608
OOL85886.1
Hypothetical protein.
       0.592
OOL85887.1
Hypothetical protein.
       0.592
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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