STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOL84640.1PGL/p-HBAD biosynthesis glycosyltransferasec. (433 aa)    
Predicted Functional Partners:
pksJ_2
Polyketide synthase PksJ.
 
 
 0.828
fabF_6
3-oxoacyl-[acyl-carrier-protein] synthase 2; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.825
pksJ_1
Polyketide synthase PksJ.
 
 
 0.784
rebG
4'-demethylrebeccamycin synthase.
  
    0.773
sfp_1
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
 
     0.767
lgrD
Linear gramicidin synthase subunit D.
 
 
 0.755
OOL84642.1
Putative esterase.
  
    0.751
OOL84784.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 
 0.720
ppsD
Plipastatin synthase subunit D.
 
  
 0.656
OOL85719.1
Putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
    0.622
Your Current Organism:
Clostridium roseum
NCBI taxonomy Id: 84029
Other names: ATCC 17797, C. roseum, DSM 7320
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