Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJ218_03730 | fhs | GCA_001052115_00224 | GCA_001052115_00232 | Unannotated protein. | Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family. | 0.981 |
CJ218_03730 | fmt | GCA_001052115_00224 | GCA_001052115_00320 | Unannotated protein. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.461 |
CJ218_03730 | folD | GCA_001052115_00224 | GCA_001052115_00193 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.825 |
CJ218_03730 | glyA | GCA_001052115_00224 | GCA_001052115_00093 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.973 |
CJ218_03730 | pheT | GCA_001052115_00224 | GCA_001052115_00191 | Unannotated protein. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.982 |
CJ218_03730 | purH | GCA_001052115_00224 | GCA_001052115_00229 | Unannotated protein. | Unannotated protein. | 0.999 |
CJ218_03730 | purN | GCA_001052115_00224 | GCA_001052115_00228 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.999 |
CJ218_06680 | CJ218_08440 | GCA_001052115_00609 | GCA_001052115_01266 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein. | 0.541 |
CJ218_06680 | folD | GCA_001052115_00609 | GCA_001052115_00193 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.950 |
CJ218_06680 | glyA | GCA_001052115_00609 | GCA_001052115_00093 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.476 |
CJ218_06680 | pheT | GCA_001052115_00609 | GCA_001052115_00191 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.531 |
CJ218_06680 | purN | GCA_001052115_00609 | GCA_001052115_00228 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.916 |
CJ218_08440 | CJ218_06680 | GCA_001052115_01266 | GCA_001052115_00609 | Unannotated protein. | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | 0.541 |
CJ218_08440 | fhs | GCA_001052115_01266 | GCA_001052115_00232 | Unannotated protein. | Unannotated protein; Belongs to the formate--tetrahydrofolate ligase family. | 0.959 |
CJ218_08440 | fmt | GCA_001052115_01266 | GCA_001052115_00320 | Unannotated protein. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.951 |
CJ218_08440 | folD | GCA_001052115_01266 | GCA_001052115_00193 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.957 |
CJ218_08440 | glyA | GCA_001052115_01266 | GCA_001052115_00093 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.647 |
CJ218_08440 | purH | GCA_001052115_01266 | GCA_001052115_00229 | Unannotated protein. | Unannotated protein. | 0.951 |
CJ218_08440 | purN | GCA_001052115_01266 | GCA_001052115_00228 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.952 |
CJ218_08440 | thyA | GCA_001052115_01266 | GCA_001052115_00275 | Unannotated protein. | Unannotated protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.952 |
page 1 of 5